1. Wang C, Zheng X, Kvitt H, Sheng H, Sun D, Niu G, Tchernov D, & Shi T*. (2023). Lineage-specific symbionts mediate differential coral responses to thermal stress. Microbiome 11: 211. https://doi.org/10.1186/s40168-023-01653-4 
2. Zhang C, Shi T, Liu J, He Z, Thomas H, Dong H, Rinkevich B, Wang Y, Hyun JH, Weinbauer M, López-Abbate C, Tu Q, Xie S, Yamashita Y, Tishchenko P, Chen Q, Zhang R, & Jiao N. (2022). Eco-engineering approaches for ocean negative carbon emission. Science Bulletin 67: 2564–2573. https://doi.org/10.1016/j.scib.2022.11.016
3. Kvitt H, Malik A, Ben-Tabou de-Leon S, Shemesh E, Lalzar M, Gruber DF, Rosenfeld H, Shi T, Mass T, & Tchernov D. (2022). Transcriptional responses indicate acclimation to prolonged deoxygenation in the coral Stylophora pistillata. Frontiers in Marine Science 9: 999558. https://doi.org/10.3389/fmars.2022.999558
4. Wang C, Zheng X, Li Y, Sun D, Huang W, & Shi T*. (2022). Symbiont shuffling dynamics associated with photodamage during temperature stress in coral symbiosis. Ecological Indicators 145: 109706. https://doi.org/10.1016/j.ecolind.2022.109706
5. Yuan J, Cheng J, Fan C, Wu P, Zhang Y, Cao M, & Shi T*. (2022). Development of shuttle vectors for rapid prototyping of engineered Synechococcus sp. PCC7002. Applied Microbiology and Biotechnology 106: 8169–8181. https://doi.org/10.1007/s00253-022-12289-z
6. Zheng X, Wang C, Sheng H, Niu G, Dong X, Yuan L, & Shi T*. (2021). Effects of ocean acidification on carbon and nitrogen fixation in the hermatypic coral Galaxea fascicularis. Frontiers in Marine Science 8: 644965. https://doi.org/10.3389/fmars.2021.644965
7. Jiao N, Liu J, Shi T, Zhang C, Zhang Y, Zheng Q, Chen Q, Tang K, Wang Y, Dong H, Tang J, Ye S, Dong S, Gao K, Zhang J, Xue Q, Li Q, He Z, Tu Q, Wang F, Huang X, Bai Y, & Pan D. (2021). Deploying ocean negative carbon emissions to implement the carbon neutrality strategy (in Chinese). Scientia Sinica Terrae 51: 632–643. https://doi.org/10.1360/SSTe-2020-0358
8. Shi T*, Zheng X, Zhang H, Wang Q, & Zhong X. (2021). Coral reefs: Potential blue carbon sinks for climate change mitigation (in Chinese). Bulletin of the Chinese Academy of Sciences 36: 270–278. https://doi.org/10.16418/j.issn.1000-3045.20210217102
9. Shi T*, Niu G, Kvitt H, Zheng X, Qin Q, Sun D, Ji Z, & Tchernov D. (2021). Untangling ITS2 genotypes of algal symbionts in zooxanthellate corals. Molecular Ecology Resources 21: 137–152. https://doi.org/10.1111/1755-0998.13250
10. Xiao H, Deng W, Wei G, Chen J, Zheng X, Shi T, Chen X, Wang C, Liu X, & Zeng, T. (2020). A pilot study on zinc isotopic compositions in shallow-water coral skeletons. Geochemistry, Geophysics, Geosystems 21: e2020GC009430. https://doi.org/10.1029/2020GC009430
11. Muñoz-Marín MC, Shilova IN, Shi T, Farnelid H, Cabello AM, & Zehr JP. (2019). The transcriptional cycle is suited to daytime N2 fixation in the unicellular cyanobacterium Candidatus Atelocyanobacterium Thalassa (UCYN-A). mBio 10: e02495–02418. 10: e02495–02418. https://doi.org/10.1128/mBio.02495-18
12. Jiao K, Xiao W, Xu Y, Zeng X, Ho SH, Laws EA, Lu Y, Ling X, Shi T, Sun Y, Tang X, & Lin L. (2018). Using a trait-based approach to optimize mixotrophic growth of the red microalga Porphyridium purpureum towards fatty acid production. Biotechnology for Biofuels 11: 273. https://doi.org/10.1186/s13068-018-1277-7
13. Chang J, Le K, Song X, Jiao K, Zeng X, Ling X, Shi T, Tang X, Sun Y, & Lin L. (2017). Scale-up cultivation enhanced arachidonic acid accumulation by red microalgae Porphyridium purpureum. Bioprocess and Biosystems Engineering 40: 1763–1773. https://doi.org/10.1007/s00449-017-1831-x
14. Shi T, Ilikchyan I, Rabouille S, & Zehr JP. (2010). Genome-wide analysis of diel gene expression in the unicellular N2-fixing cyanobacterium Crocosphaera watsonii WH8501. The ISME Journal 4: 621–632. https://doi.org/10.1038/ismej.2009.148
15. Hewson I, Poretsky RS, Beinart RA, White AE, Shi T, Bench SR, Moisander PH, Paerl RW, Tripp HJ, Montoya JP, Moran MA, & Zehr JP. (2009). In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsonii. The ISME Journal 3: 618–631. https://doi.org/10.1038/ismej.2009.8
16. Zehr JP, Bench SR, Carter BJ, Hewson I, Niazi F, Shi T, Tripp HJ, & Affourtit JP. (2008). Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II. Science 322: 1110–1112. https://doi.org/10.1126/science.1165340
17. Shi T & Falkowski PG. (2008). Genome evolution in cyanobacteria: The stable core and the variable shell. PNAS 105: 2510–2515. https://doi.org/10.1073/pnas.0711165105
18. Shi T, Sun Y, & Falkowski PG. (2007). Effects of iron limitation on the expression of metabolic genes in the marine cyanobacterium Trichodesmium erythraeum IMS101. Environmental Microbiology 9: 2945–2956. https://doi.org/10.1111/j.1462-2920.2007.01406.x
19. Shi T, Bibby TS, Jiang L, Irwin AJ, & Falkowski PG. (2005). Protein interactions limit the rate of evolution of photosynthetic genes in cyanobacteria. Molecular Biology and Evolution 22: 2179–2189. https://doi.org/10.1093/molbev/msi216
