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-  Zhenling Peng , Zixia Li , Qiaozhen Meng , Bi Zhao and Lukasz Kurgan. CLIP: Accurate prediction of disordered linear interacting peptides (LIPs) from protein sequences using co-evolutionary information. Briefings In Bioinformatics,
-  Du, Zongyang. Toward the assessment of predicted inter-residue distance. Bioinformatics, 38, 962, 2022.
-  Du, Zongyang. The trRosetta server for fast and accurate protein structure prediction. NATURE PROTOCOLS, 16, 5634, 2021.
-  Su, Hong. Improved Protein Structure Prediction Using a New Multi-Scale Network and Homologous Templates. ADVANCED SCIENCE, 8, 2021.
-  Ye, Lisha. Improved estimation of model quality using predicted inter-residue distance. Bioinformatics, 37, 3752, 2021.
-  Song, Ruiyang. Accurate Sequence-Based Prediction of Deleterious nsSNPs with Multiple Sequence Profiles and Putative Binding Residues. BIOMOLECULES, 11, 2021.
-  Protein contact prediction using metagenome sequence data and residual neural networks. Bioinformatics, 36, 41-48, 2020.
-  APOD: accurate sequence-based predictor of disordered flexible linkers. Bioinformatics, 36, 754-761, 2020.
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