1. Wang C, Zheng X, Kvitt H, Sheng H, Sun D, Niu G, Tchernov D, & Shi T*. (2023). Lineage-specific symbionts mediate differential coral responses to thermal stress. Microbiome 11: 211. https://doi.org/10.1186/s40168-023-01653-4 

2. Zhang C, Shi T, Liu J, He Z, Thomas H, Dong H, Rinkevich B, Wang Y, Hyun JH, Weinbauer M, López-Abbate C, Tu Q, Xie S, Yamashita Y, Tishchenko P, Chen Q, Zhang R, & Jiao N. (2022). Eco-engineering approaches for ocean negative carbon emission. Science Bulletin 67: 2564–2573. https://doi.org/10.1016/j.scib.2022.11.016 

3. Kvitt H, Malik A, Ben-Tabou de-Leon S, Shemesh E, Lalzar M, Gruber DF, Rosenfeld H, Shi T, Mass T, & Tchernov D. (2022). Transcriptional responses indicate acclimation to prolonged deoxygenation in the coral Stylophora pistillata. Frontiers in Marine Science 9: 999558. https://doi.org/10.3389/fmars.2022.999558 

4. Wang C, Zheng X, Li Y, Sun D, Huang W, & Shi T*. (2022). Symbiont shuffling dynamics associated with photodamage during temperature stress in coral symbiosis. Ecological Indicators 145: 109706. https://doi.org/10.1016/j.ecolind.2022.109706 

5. Yuan J, Cheng J, Fan C, Wu P, Zhang Y, Cao M, & Shi T*. (2022). Development of shuttle vectors for rapid prototyping of engineered Synechococcus sp. PCC7002. Applied Microbiology and Biotechnology 106: 8169–8181. https://doi.org/10.1007/s00253-022-12289-z 

6. Zheng X, Wang C, Sheng H, Niu G, Dong X, Yuan L, & Shi T*. (2021). Effects of ocean acidification on carbon and nitrogen fixation in the hermatypic coral Galaxea fascicularis. Frontiers in Marine Science 8: 644965. https://doi.org/10.3389/fmars.2021.644965 

7. 焦念志, 刘纪化, 石拓, 张传伦, 张永雨, 郑强, 陈泉睿, 汤凯, 王誉泽, 董海良, 唐剑武, 叶思源, 董双林, 高坤山, 张继红, 薛强, 李琦, 贺志理, 屠奇超, 王法明, 黄小平, 白雁, & 潘德炉. (2021). 实施海洋负排放 践行碳中和战略. 中国科学: 地球科学 51: 632–643. https://doi.org/10.1360/SSTe-2020-0358 

8. 石拓*, 郑新庆, 张涵, 王啟芳, & 钟昕. (2021). 珊瑚礁：减缓气候变化的潜在蓝色碳汇. 中国科学院院刊 36: 270–278. https://doi.org/10.16418/j.issn.1000-3045.20210217102 

9. Shi T*, Niu G, Kvitt H, Zheng X, Qin Q, Sun D, Ji Z, & Tchernov D. (2021). Untangling ITS2 genotypes of algal symbionts in zooxanthellate corals. Molecular Ecology Resources 21: 137–152. https://doi.org/10.1111/1755-0998.13250 

10. Xiao H, Deng W, Wei G, Chen J, Zheng X, Shi T, Chen X, Wang C, Liu X, & Zeng, T. (2020). A pilot study on zinc isotopic compositions in shallow-water coral skeletons. Geochemistry, Geophysics, Geosystems 21: e2020GC009430. https://doi.org/10.1029/2020GC009430 

11. Muñoz-Marín MC, Shilova IN, Shi T, Farnelid H, Cabello AM, & Zehr JP. (2019). The transcriptional cycle is suited to daytime N₂ fixation in the unicellular cyanobacterium Candidatus Atelocyanobacterium Thalassa (UCYN-A). mBio 10: e02495–02418. 10: e02495–02418. https://doi.org/10.1128/mBio.02495-18 

12. Jiao K, Xiao W, Xu Y, Zeng X, Ho SH, Laws EA, Lu Y, Ling X, Shi T, Sun Y, Tang X, & Lin L. (2018). Using a trait-based approach to optimize mixotrophic growth of the red microalga Porphyridium purpureum towards fatty acid production. Biotechnology for Biofuels 11: 273. https://doi.org/10.1186/s13068-018-1277-7 

13. Chang J, Le K, Song X, Jiao K, Zeng X, Ling X, Shi T, Tang X, Sun Y, & Lin L. (2017). Scale-up cultivation enhanced arachidonic acid accumulation by red microalgae Porphyridium purpureum. Bioprocess and Biosystems Engineering 40: 1763–1773. https://doi.org/10.1007/s00449-017-1831-x 

14. Shi T, Ilikchyan I, Rabouille S, & Zehr JP. (2010). Genome-wide analysis of diel gene expression in the unicellular N₂-fixing cyanobacterium Crocosphaera watsonii WH8501. The ISME Journal 4: 621–632. https://doi.org/10.1038/ismej.2009.148 

15. Hewson I, Poretsky RS, Beinart RA, White AE, Shi T, Bench SR, Moisander PH, Paerl RW, Tripp HJ, Montoya JP, Moran MA, & Zehr JP. (2009). In situ transcriptomic analysis of the globally important keystone N₂-fixing taxon Crocosphaera watsonii. The ISME Journal 3: 618–631. https://doi.org/10.1038/ismej.2009.8 

16. Zehr JP, Bench SR, Carter BJ, Hewson I, Niazi F, Shi T, Tripp HJ, & Affourtit JP. (2008). Globally distributed uncultivated oceanic N₂-fixing cyanobacteria lack oxygenic photosystem II. Science 322: 1110–1112. https://doi.org/10.1126/science.1165340 

17. Shi T & Falkowski PG. (2008). Genome evolution in cyanobacteria: The stable core and the variable shell. PNAS 105: 2510–2515. https://doi.org/10.1073/pnas.0711165105 

18. Shi T, Sun Y, & Falkowski PG. (2007). Effects of iron limitation on the expression of metabolic genes in the marine cyanobacterium Trichodesmium erythraeum IMS101. Environmental Microbiology 9: 2945–2956. https://doi.org/10.1111/j.1462-2920.2007.01406.x 

19. Shi T, Bibby TS, Jiang L, Irwin AJ, & Falkowski PG. (2005). Protein interactions limit the rate of evolution of photosynthetic genes in cyanobacteria. Molecular Biology and Evolution 22: 2179–2189. https://doi.org/10.1093/molbev/msi216