Paper Publications

• [1]  张玉丽. Highly accurate diagnosis of pancreatic cancer by integrative modeling using gut microbiome and exposome data.  eScience,  27,  2024. 
• [2]  . Graph Fourier transform for spatial omics representation and analyses of complex organs.  NATURE COMMUNICATIONS,  15,  2024. 
• [3]  . An Explainable Graph Neural Framework to Identify Cancer-Associated Intratumoral Microbial Communities.  Advanced Science,  2024. 
• [4]  Li, Yang. Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data.  Briefings in Bioinformatics,  25,  2024. 
• [5]  . A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data.  Patterns,  5,  2024. 
• [6]  . MarsGT: Multi-omics analysis for rare population inference using single-cell graph transformer.  NATURE COMMUNICATIONS,  15,  2024. 
• [7]  . CEMIG: prediction of the cis-regulatory motif using the de Bruijn graph from ATAC-seq.  Briefings in Bioinformatics,  25,  2024.