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- . Using Deep Learning to Classify Full-Length Transcriptome Sequences. 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023, 333-338, 2025.
- Ting Yu, Xiaoyu Zhao and Guojun Li*. TransMeta simultaneously assembles multisample RNA-seq reads. Genome Research, 2022.
- Xiaoyu Zhao and Ting Yu（通讯作者）*. Tiglon enables accurate transcriptome assembly via integrating mappings of different aligners. iScience, 2022.
- Ting Yu, Zengchao Mu, Zhaoyuan Fang, Xiaoping Liu, Xin Gao and Juntao Liu. TransBorrow: Genome-guided transcriptome assembly by borrowing assemblies from different assemblers. Genome Research, 2020.
- Ting Yu, Juntao Liu, Xin Gao and Guojun Li. iPAC: A genome-guided assembler of isoforms via phasing and combing paths. Bioinformatics, 2020.
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