山东大学教师主页李单单 Paper Publications Home

lidandan Research Associate

李单单，博士，硕士生导师、助理研究员。主要从事微生物生态学研究，基于微生物组学大数据分析糖苷水解酶的全球分布和生态作用。发表SCI论文14篇，其中，以第一或通讯作者发表期刊论文7篇，主要包括Microbiome、Nucleic Acids Research、Global Ecology and Biogeography、Environmental Microbiology等期刊。作为主持人主持国家自然科学基金青年项目1项，中国博士后科学基金面上项目1项，青岛市应用研究项目1项。作为项目骨干参与了5项包括国家自然科学基金、国家科技重大专项等在... More+

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Paper Publications

[1] Dan-dan Li, Jianing Wang, Yiru Jiang, Peng Zhang, Ya Liu, Yue-zhong Li, Zheng Zhang. Quantifying functional redundancy in polysaccharide-degrading prokaryotic communities. MICROBIOME, 12, 2024.

[2] Zhuo Pan, Dan-dan Li, Peng Li, Yu Geng, Yiru Jiang, Ya Liu, Yue-zhong Li, Zheng Zhang. GDPF: a data resource for the distribution of prokaryotic protein families across the global biosphere. Nucleic Acids Research, 52, D724-D731, 2024.

[3] Dan‐dan Li, Zheng Zhang, Peng Zhang, Jia‐ning Wang, Ya Liu, Yue‐zhong Li. Deterministic assembly processes shaping habitat-specific glycoside hydrolase composition. Global Ecology and Biogeography, 33, 189-202, 2024.

[4] Dan‐dan Li, Zheng Zhang, Jia‐ning Wang, Peng Zhang, Ya Liu, Yue‐zhong Li. Estimate of the degradation potentials of cellulose, xylan, and chitin across global prokaryotic communities. Environmental Microbiology, 397-409, 2023.

[5] Yiru Jiang, Jing Luo, Danqing Huang, Ya Liu, Dan-dan Li. Machine Learning Advances in Microbiology: A Review of Methods and Applications. Frontiers in Microbiology, 13, 925454, 2022.

[6] Dan-dan Li, Jin-lan Wang, Ya Liu, Yue-zhong Li, Zheng Zhang. Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases. Computational and Structural Biotechnology Journal, 19, 5931–5942, 2021.

[7] Dan-dan Li, Jinlan Wang, Zichen Jin, Zheng Zhang. Structural and evolutionary characteristics of dynamin-related GTPase OPA1. PeerJ, 7, e7285, 2019.

[8] Ya Liu, Sheng Liu, Zhuo Pan, Yu Ren, Yiru Jiang, Feng Wang, Dan-dan Li, Yue-zhong Li, Zheng Zhang. PAT: a comprehensive database of prokaryotic antimicrobial toxins. Nucleic Acids Research, D452-D459, 2023.

[10] Zheng Zhang†, , Ya Liu†, Peng Zhang, Jianing Wang, Dan-dan Li, Yue-zhong Li. PAAR proteins are versatile clips that enrich the antimicrobial weapon arsenals of prokaryotes. mSystems, 6, e00953-21, 2021.

[11] Ya Liu, Zheng Zhang, Feng Wang, Dan-dan Li, Yue-zhong Li. Identification of type VI secretion system toxic effectors using an adaptor as a marker. Computational and Structural Biotechnology Journal, 18, 3723-3733, 2020.

[12] Haitao Chen, Dan-dan Li, Yao Cai, Long-Fei Wu, Tao Song. Bacteriophytochrome from Magnetospirillum magneticum affects phototactic behavior in response to light. FEMS Microbiology Letters, 367, 2020.

[13] Xiaomei Zhang, Shuai Wang, Xiuyun Wu, Shijia Liu, Dan-dan Li, Hao Xu, Peiji Gao, Guanjun Chen, Lushan Wang*. Subsite-specific contributions of different aromatic residues in the active site architecture of glycoside hydrolase family 12. Scientific Reports, 5, 18357, 2015.

[14] Qing Zhang, Xiaomei Zhang, Peipei Wang, Dan-dan Li, Guanjun Chen, Peiji Gao, Lushan Wang*. Determination of the action modes of cellulases from hydrolytic profiles over a time course using fluorescence-assisted carbohydrate electrophoresis. Electrophoresis, 36, 910-917, 2015.

Paper Publications

[1] Dan-dan Li, Jianing Wang, Yiru Jiang, Peng Zhang, Ya Liu, Yue-zhong Li, Zheng Zhang. Quantifying functional redundancy in polysaccharide-degrading prokaryotic communities. MICROBIOME, 12, 2024.

[2] Zhuo Pan, Dan-dan Li, Peng Li, Yu Geng, Yiru Jiang, Ya Liu, Yue-zhong Li, Zheng Zhang. GDPF: a data resource for the distribution of prokaryotic protein families across the global biosphere. Nucleic Acids Research, 52, D724-D731, 2024.

[3] Dan‐dan Li, Zheng Zhang, Peng Zhang, Jia‐ning Wang, Ya Liu, Yue‐zhong Li. Deterministic assembly processes shaping habitat-specific glycoside hydrolase composition. Global Ecology and Biogeography, 33, 189-202, 2024.

[4] Dan‐dan Li, Zheng Zhang, Jia‐ning Wang, Peng Zhang, Ya Liu, Yue‐zhong Li. Estimate of the degradation potentials of cellulose, xylan, and chitin across global prokaryotic communities. Environmental Microbiology, 397-409, 2023.

[5] Yiru Jiang, Jing Luo, Danqing Huang, Ya Liu, Dan-dan Li. Machine Learning Advances in Microbiology: A Review of Methods and Applications. Frontiers in Microbiology, 13, 925454, 2022.

[6] Dan-dan Li, Jin-lan Wang, Ya Liu, Yue-zhong Li, Zheng Zhang. Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases. Computational and Structural Biotechnology Journal, 19, 5931–5942, 2021.

[7] Dan-dan Li, Jinlan Wang, Zichen Jin, Zheng Zhang. Structural and evolutionary characteristics of dynamin-related GTPase OPA1. PeerJ, 7, e7285, 2019.

[8] Ya Liu, Sheng Liu, Zhuo Pan, Yu Ren, Yiru Jiang, Feng Wang, Dan-dan Li, Yue-zhong Li, Zheng Zhang. PAT: a comprehensive database of prokaryotic antimicrobial toxins. Nucleic Acids Research, D452-D459, 2023.

[10] Zheng Zhang†, *, Ya Liu†, Peng Zhang, Jianing Wang, Dan-dan Li, Yue-zhong Li*. PAAR proteins are versatile clips that enrich the antimicrobial weapon arsenals of prokaryotes. mSystems, 6, e00953-21, 2021.

[11] Ya Liu, Zheng Zhang*, Feng Wang, Dan-dan Li, Yue-zhong Li*. Identification of type VI secretion system toxic effectors using an adaptor as a marker. Computational and Structural Biotechnology Journal, 18, 3723-3733, 2020.

[12] Haitao Chen, Dan-dan Li, Yao Cai, Long-Fei Wu*, Tao Song*. Bacteriophytochrome from Magnetospirillum magneticum affects phototactic behavior in response to light. FEMS Microbiology Letters, 367, 2020.

[13] Xiaomei Zhang, Shuai Wang, Xiuyun Wu, Shijia Liu, Dan-dan Li, Hao Xu, Peiji Gao, Guanjun Chen, Lushan Wang*. Subsite-specific contributions of different aromatic residues in the active site architecture of glycoside hydrolase family 12. Scientific Reports, 5, 18357, 2015.

[14] Qing Zhang, Xiaomei Zhang, Peipei Wang, Dan-dan Li, Guanjun Chen, Peiji Gao, Lushan Wang*. Determination of the action modes of cellulases from hydrolytic profiles over a time course using fluorescence-assisted carbohydrate electrophoresis. Electrophoresis, 36, 910-917, 2015.

[10] Zheng Zhang†, , Ya Liu†, Peng Zhang, Jianing Wang, Dan-dan Li, Yue-zhong Li. PAAR proteins are versatile clips that enrich the antimicrobial weapon arsenals of prokaryotes. mSystems, 6, e00953-21, 2021.

[11] Ya Liu, Zheng Zhang, Feng Wang, Dan-dan Li, Yue-zhong Li. Identification of type VI secretion system toxic effectors using an adaptor as a marker. Computational and Structural Biotechnology Journal, 18, 3723-3733, 2020.

[12] Haitao Chen, Dan-dan Li, Yao Cai, Long-Fei Wu, Tao Song. Bacteriophytochrome from Magnetospirillum magneticum affects phototactic behavior in response to light. FEMS Microbiology Letters, 367, 2020.