• Dan-dan Li, Jianing Wang, Yiru Jiang, Peng Zhang, Ya Liu, Yue-zhong Li, Zheng Zhang. Quantifying functional redundancy in polysaccharide-degrading prokaryotic communities.  MICROBIOME,  12,  2024. 

• Zhuo Pan, Dan-dan Li, Peng Li, Yu Geng, Yiru Jiang, Ya Liu, Yue-zhong Li, Zheng Zhang. GDPF: a data resource for the distribution of prokaryotic protein families across the global biosphere.  Nucleic Acids Research,  52,  D724-D731, 2024. 

• Dan‐dan Li, Zheng Zhang, Peng Zhang, Jia‐ning Wang, Ya Liu, Yue‐zhong Li. Deterministic assembly processes shaping habitat-specific glycoside hydrolase composition.  Global Ecology and Biogeography,  33,  189-202, 2024. 

• Dan‐dan Li, Zheng Zhang, Jia‐ning Wang, Peng Zhang, Ya Liu, Yue‐zhong Li. Estimate of the degradation potentials of cellulose, xylan, and chitin across global prokaryotic communities.  Environmental Microbiology,  397-409, 2023. 

• Yiru Jiang, Jing Luo, Danqing Huang, Ya Liu, Dan-dan Li. Machine Learning Advances in Microbiology: A Review of Methods and Applications.  Frontiers in Microbiology,  13,  925454, 2023. 

• Dan-dan Li, Jin-lan Wang, Ya Liu, Yue-zhong Li, Zheng Zhang. Expanded analyses of the functional correlations within structural classifications of glycoside hydrolases.  Computational and Structural Biotechnology Journal,  19,  5931–5942, 2023. 

• Dan-dan Li, Jinlan Wang, Zichen Jin, Zheng Zhang. Structural and evolutionary characteristics of dynamin-related GTPase OPA1.  PeerJ,  7,  e7285, 2023. 

• Ya Liu, Sheng Liu, Zhuo Pan, Yu Ren, Yiru Jiang, Feng Wang, Dan-dan Li, Yue-zhong Li, Zheng Zhang. PAT: a comprehensive database of prokaryotic antimicrobial toxins.  Nucleic Acids Research,  D452-D459, 2023. 

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