N1-methylpseudouridine mRNA modification enhances efficiency and specificity of gene overexpression by preventing Prkra-mediated global translation repression

Title of Paper:N1-methylpseudouridine mRNA modification enhances efficiency and specificity of gene overexpression by preventing Prkra-mediated global translation repression

Journal:Nucleic Acids Research

Summary:In vitro transcribed messenger RNA (IVT mRNA) has emerged as a pivotal tool in mRNA-based therapies and has been extensively employed in gene function studies and genetic tool applications. However, the IVT process generates double-stranded RNA (dsRNA) by-products that are recognized by dsRNA sensors, triggering innate immune responses. In this study, we comprehensively analyzed the detrimental effects of dsRNA by-products on early zebrafish embryos, revealing that these by-products induce cell necrosis and delay maternal–zygotic transition (MZT) by reducing global translation efficiency via Prkra (Protein Activator Of Interferon Induced Protein Kinase; also called PACT in mammals), a dsRNA sensor recently identified in pluripotent cells. Importantly, we demonstrate that N1-methylpseudouridine (m1Ψ) modification of IVT mRNAs effectively mitigates these adverse effects, as m1Ψ-modified dsRNAs exhibit significantly lower binding affinity to the Prkra dimer. Our findings underscore a previously overlooked challenge in the use of IVT mRNA in early embryos and offer a robust solution to enhance the fidelity of mRNA applications. Furthermore, we elucidate that m1Ψ modification minimizes the dsRNA-induced stress response in pluripotent cells through a distinct mechanism.

First Author:Tong Lu

Correspondence Author:Ming Shao

All the Authors:Aijun Chen,Changjin Li,Kangyi Li,Sen Wang,Yizhuang Zhang,Boya Yang,Jiasheng Wang,Qianqian Gong,Ang Li,Xiangguo Liu,Pengcheng Ma,Bingyu Mao,De-Li Shi

Indexed by:Journal paper

Discipline:Natural Science

First-Level Discipline:Biology

Cited Times:1

Number of Words:10000

Translation or Not:No

Date of Publication:2025-10

Included Journals:SCI

Release Time:2025-10-18