- [21] Renmin Han, Zhipeng Bao, Xiangrui Zeng, Tongxin Niu, Fa Zhang, Min Xu, Xin Gao. A joint method for marker-free alignment of tilt series in electron tomography. (ISMB/ECCB 2019, acceptance rate 19%) Bioinformatics, 35 (14), i249-i259, 2019.
- [22] Renmin Han, Xiaohua Wan, Lun Li, Albert Lawrence, Peng Yang, Yu Li, Sheng Wang, Fei Sun, Zhiyong Liu, Xin Gao, Fa Zhang. AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction. Bioinformatics, 35 (2), 319-328, 2019.
- [23] Renmin Han, Yu Li, Xin Gao, Sheng Wang. An accurate and rapid continuous wavelet dynamic time warping algorithm for end-to-end mapping in ultra-long nanopore sequencing. (ECCB 2018, acceptance rate 17%) Bioinformatics, 34 (17), i722-i731, 2018.
- [24] Yu Li, Fan Xu, Fa Zhang, Pingyong Xu, Minshu Zhang, Ming Fan, Lihua Li, Xin Gao*, Renmin Han*. DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy. (ISMB 2018, acceptance rate 19%) Bioinformatics, 34 (13), i284-i294, 2018.
- [25] Renmin Han, Fa Zhang, Xin Gao. A fast fiducial marker tracking model for fully automatic alignment in electron tomography. Bioinformatics, 34 (5), 853-863, 2018.
- [26] Renmin Han#, Xiaohua Wan#, Zihao Wang, Yu Hao, Jingrong Zhang, Yu Chen, Xin Gao, Zhiyong Liu, Fei Ren, Fei Sun, Fa Zhang. AuTom: A novel automatic platform for electron tomography reconstruction. Journal of Structural Biology, 199 (3), 196-208, 2017.
- [27] Renmin Han, Liansan Wang, Fei Sun, Zhiyong Liu, Fa Zhang. A novel fully automatic scheme for fiducial marker-based alignment in electron tomography. Journal of Structural Biology, 192 (3), 403-417, 2015.
- [28] Renmin Han, Liansan Wang, Fan Xu, Yongdeng Zhang, Mingshu Zhang, Zhiyong Liu, Fei Ren, Fa Zhang. Drift correction for single-molecule imaging by molecular constraint field, a distance minimum metric. BMC Biophysics, 8 (1): 1, 2015.
- [29] Renmin Han, Fa Zhang, Xiaohua Wan, Jose-Jesus Fernández, Fei Sun, Zhiyong Liu. A marker-free automatic alignment method based on scale-invariant features. Journal of Structural Biology, 186 (1), 167-180, 2014.
- [30] Lun Li, Renmin Han* , Zhaotian Zhang, Tiande Guo, Zhiyong Liu, Fa Zhang*. Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography. BMC Bioinformatics, in press, 2019.
- [31] Jingrong Zhang, Zihao Wang, Yu Chen, Renmin Han, Zhiyong Liu, Fei Sun, Fa Zhang. PIXER: an automated particle-selection method based on segmentation using a deep neural network. BMC Bioinformatics, 20:41, 2019.
- [32] Yu Li, Renmin Han, Chongwei Bi, Mo Li, Sheng Wang, Xin Gao. DeepSimulator: a deep simulator for Nanopore sequencing. Bioinformatics, 34 (17), 2899-2908, 2018.
- [33] Fan Xu, Mingshu Zhang, Wenting He, Renmin Han, Fudong Xue, Zhiyong Liu, Fa Zhang, Jennifer Lippincott-Schwartz, Pingyong Xu. Live cell single molecule-guided Bayesian localization super resolution microscopy. Cell Research, 27, 713-716, 2017.
- [34] Xiaohua Wan, Sebastien Phan, Albert Lawrence, Fa Zhang, Renmin Han, Zhiyong Liu, Mark Ellisman. Iterative methods in large field electron microscope tomography. SIAM Journal on Scientific Computing, 35 (5), S402-S419, 2013.