教师简介

许一菲:1988年生;博士、教授、博士生导师、泰山学者青年专家、山东省海外优青、山东大学齐鲁青年学者(第一层次)、山东省高等学校青年创新团队带头人。2016年于美国密西西比州立大学获生物信息学博士学位,2017-2020年任英国牛津大学生物信息、计算生物研究员,2020年任山东大学教授、博导。


以科技创新服务人民生命健康为使命,从事自然疫源性疾病的流行病学、病原生态学和病原生物信息学研究,在病原检测新技术、病原跨物种传播、疫病侦察预警等方面开展系统性原始创新研究。主持国家自然科学基金面上项目、山东省优秀青年科学基金(海外)、教育部春晖计划国际合作项目等课题,承担国家重点研发计划重点专项(课题骨干)等多项课题。代表性成果以通讯作者发表于Nature MicrobiologyNature CommunicationsScience China Life SciencesNucleic Acids Research等主流学术期刊。以第一发明人申请国家发明专利3项。


任中国生物工程学会生物医药大数据专委会常务委员,中国生物物理学会生物医学信息分会委员,中国野生动物保护协会野生动物疫源疫病专委会副秘书长,中国畜牧兽医学会高级会员,山东省公共卫生学会传染病防控分会副主任委员,山东省基层卫生协会检验分会副主任委员,Microbiology SpectrumhLifeInfectious Medicine兽类学报等期刊编委和学术编辑,PLOS PathogensBioinformatics等学术期刊审稿人


代表性论文:

  1. Wei, Xuemin; Li, Hongfeng; Huang, Zheng Y. X.; Li, Shuo; Wang, Yuhao; Lan, Jie; Hu, Li; Li, Yang; Becker, Daniel J.; Wei, Fuwen; Xu, Yifei; A global-scale assessment of zoonotic virus diversity and spillover potential in urban-adapted mammal species, Nature Microbiology, 2026(最后通讯作者)

  2. Li, Hongfeng; Huang, Zheng Y. X.; Lan, Jie; Hu, Li; Wei, Xuemin; Wang, Yuhao; Li, Xiujun; Li, Yang; Becker, Daniel J.; Wei, Fuwen; Xu, Yifei; Diversity and transmission and zoonotic potential of microbes in true insectivores, Nature Communications, 2025, 16(1)(最后通讯作者)

  3. Li, Hongfeng; Huang, Zheng Y. X.; Lan, Jie; Hu, Li; Wang, Zhilin; Wang, Yingying; Santini, Luca; Becker, Daniel J.; Xu, Yifei; Insectivores exhibit superior microbial network connectivity and elevated zoonotic risk by 2035 relative to rodents and bats, Science China Life Sciences, 2026(最后通讯作者)

  4. Xu, Yifei; Lewandowski, Kuiama; Downs, Louise O; Kavanagh, James; Hender, Thomas; Lumley, Sheila; Jeffery, Katie; Foster, Dona; Sanderson, Nicholas D; Vaughan, Ali; Morgan, Marcus; Vipond, Richard; Carroll, Miles; Peto, Timothy; Crook, Derrick; Walker, A Sarah; Matthews, Philippa C; Pullan, Steven T; Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season, Eurosurveillance, 2021, 26(27)(独立通讯作者)

  5. Xu, Yifei; Yang-Turner, Fan; Volk, Denis; Crook, Derrick; NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline, Nucleic Acids Research, 2020, 48(W1): W366-W371(独立通讯作者)


欢迎具备流行病与卫生统计、生物信息学、病原微生物等相关学科背景的助理研究员、博士后、博士、硕士、本科生加入我们的研究团队!“众里寻他千百度。蓦然回首,那人却在,灯火阑珊处。”

邮箱:yifei.xu@@(去掉一个@)sdu.edu.cn


教育经历
  • 2012-08 — 2016-12
    美国密西西比州立大学
    博士
工作经历
  • 2020-11 — 至今
     山东大学 
    教授、博士生导师
  • 2020-01 — 2020-11
     英国牛津大学 
    计算生物研究员
  • 2017-04 — 2020-01
     英国牛津大学 
    生物信息研究员
研究方向
论文成果

(1) Wei, Xuemin; Li, Hongfeng; Huang, Zheng Y. X.; Li, Shuo; Wang, Yuhao; Lan, Jie; Hu, Li; Li, Yang; Becker, Daniel J.; Wei, Fuwen; Xu, Yifei; A global-scale assessment of zoonotic virus diversity and spillover potential in urban-adapted mammal species, Nature Microbiology, 2026

(2) Li, Hongfeng; Huang, Zheng Y. X.; Lan, Jie; Hu, Li; Wei, Xuemin; Wang, Yuhao; Li, Xiujun; Li, Yang; Becker, Daniel J.; Wei, Fuwen; Xu, Yifei; Diversity and transmission and zoonotic potential of microbes in true insectivores, Nature Communications, 2025, 16(1)

(3) Li, Hongfeng; Huang, Zheng Y. X.; Lan, Jie; Hu, Li; Wang, Zhilin; Wang, Yingying; Santini, Luca; Becker, Daniel J.; Xu, Yifei; Insectivores exhibit superior microbial network connectivity and elevated zoonotic risk by 2035 relative to rodents and bats, Science China Life Sciences, 2026

(4) Xu, Yifei; Lewandowski, Kuiama; Downs, Louise O; Kavanagh, James; Hender, Thomas; Lumley, Sheila; Jeffery, Katie; Foster, Dona; Sanderson, Nicholas D; Vaughan, Ali; Morgan, Marcus; Vipond, Richard; Carroll, Miles; Peto, Timothy; Crook, Derrick; Walker, A Sarah et al. Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season, Eurosurveillance, 2021, 26(27)

(5) Xu, Yifei; Yang-Turner, Fan; Volk, Denis; Crook, Derrick; NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline, Nucleic Acids Research, 2020, 48(W1): W366-W371

(6) Wang, Yuhao; Lin, Xiaojuan; Li, Chao; Liu, Guifang; Wang, Suting; Chen, Meng; Wei, Xuemin; Wen, Hongling; Tao, Zexin; Xu, Yifei; Metagenomic sequencing reveals viral diversity of mosquitoes from Shandong Province, China, Microbiology Spectrum, 2024, 12(4)

(7) Li, Chao; Song, Shaoxia; Huang, Xianglin; Liu, Xiaolin; Lv, Hui; Shen, Yuanyuan; Wei, Xuemin; Zhang, Wenqiang; Xu, Yifei; Molecular epidemiology and genetic diversity of norovirus among hospitalized patients with acute gastroenteritis in Shandong, China, 2016–2018, Journal of Medical Virology, 2023, 95(12)

(8) Xu, Yifei; Lewandowski, Kuiama; Jeffery, Katie; Downs, Louise O.; Foster, Dona; Sanderson, Nicholas D.; Kavanagh, James; Vaughan, Ali; Salvagno, Claudia; Vipond, Richard; Carroll, Miles; Danby, Robert; Peto, Timothy; Crook, Derrick; Walker, A. Sarah; Matthews, Philippa C.; Pullan, Steven T.; Nanopore metagenomic sequencing to investigate nosocomial transmission of human metapneumovirus from a unique genetic group among haematology patients in the United Kingdom, Journal of Infection, 2020, 80(5)

(9) Lewandowski, Kuiama; Xu, Yifei; Pullan, Steven T.; Lumley, Sheila F.; Foster, Dona; Sanderson, Nicholas; Vaughan, Alison; Morgan, Marcus; Bright, Nicole; Kavanagh, James; Vipond, Richard; Carroll, Miles; Marriott, Anthony C.; Gooch, Karen E.; Andersson, Monique; Jeffery, Katie; Peto, Timothy E. A.; Crook, Derrick W.; Walker, A. Sarah; Matthews, Philippa C.; Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples, Journal of Clinical Microbiology, 2020, 58(1)

(10) Xu, Yifei; Ramey, Andrew M.; Bowman, Andrew S.; DeLiberto, Thomas J.; Killian, Mary L.; Krauss, Scott; Nolting, Jacqueline M.; Torchetti, Mia Kim; Reeves, Andrew B.; Webby, Richard J.; Stallknecht, David E.; Wan, Xiu-Feng; Low-Pathogenic Influenza A Viruses in North American Diving Ducks Contribute to the Emergence of a Novel Highly Pathogenic Influenza A(H7N8) Virus, Journal of Virology, 2017, 91(9)

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