1.传染病流行病学、病原生物信息学、病原生态学
2.病原检测新技术、病原跨物种传播、疫病侦察预警
(1) Wei, Xuemin; Li, Hongfeng; Huang, Zheng Y. X.; Li, Shuo; Wang, Yuhao; Lan, Jie; Hu, Li; Li, Yang; Becker, Daniel J.; Wei, Fuwen; Xu, Yifei; A global-scale assessment of zoonotic virus diversity and spillover potential in urban-adapted mammal species, Nature Microbiology, 2026
(2) Li, Hongfeng; Huang, Zheng Y. X.; Lan, Jie; Hu, Li; Wei, Xuemin; Wang, Yuhao; Li, Xiujun; Li, Yang; Becker, Daniel J.; Wei, Fuwen; Xu, Yifei; Diversity and transmission and zoonotic potential of microbes in true insectivores, Nature Communications, 2025, 16(1)
(3) Li, Hongfeng; Huang, Zheng Y. X.; Lan, Jie; Hu, Li; Wang, Zhilin; Wang, Yingying; Santini, Luca; Becker, Daniel J.; Xu, Yifei; Insectivores exhibit superior microbial network connectivity and elevated zoonotic risk by 2035 relative to rodents and bats, Science China Life Sciences, 2026
(4) Xu, Yifei; Lewandowski, Kuiama; Downs, Louise O; Kavanagh, James; Hender, Thomas; Lumley, Sheila; Jeffery, Katie; Foster, Dona; Sanderson, Nicholas D; Vaughan, Ali; Morgan, Marcus; Vipond, Richard; Carroll, Miles; Peto, Timothy; Crook, Derrick; Walker, A Sarah et al. Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season, Eurosurveillance, 2021, 26(27)
(5) Xu, Yifei; Yang-Turner, Fan; Volk, Denis; Crook, Derrick; NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline, Nucleic Acids Research, 2020, 48(W1): W366-W371
(6) Wang, Yuhao; Lin, Xiaojuan; Li, Chao; Liu, Guifang; Wang, Suting; Chen, Meng; Wei, Xuemin; Wen, Hongling; Tao, Zexin; Xu, Yifei; Metagenomic sequencing reveals viral diversity of mosquitoes from Shandong Province, China, Microbiology Spectrum, 2024, 12(4)
(7) Li, Chao; Song, Shaoxia; Huang, Xianglin; Liu, Xiaolin; Lv, Hui; Shen, Yuanyuan; Wei, Xuemin; Zhang, Wenqiang; Xu, Yifei; Molecular epidemiology and genetic diversity of norovirus among hospitalized patients with acute gastroenteritis in Shandong, China, 2016–2018, Journal of Medical Virology, 2023, 95(12)
(8) Xu, Yifei; Lewandowski, Kuiama; Jeffery, Katie; Downs, Louise O.; Foster, Dona; Sanderson, Nicholas D.; Kavanagh, James; Vaughan, Ali; Salvagno, Claudia; Vipond, Richard; Carroll, Miles; Danby, Robert; Peto, Timothy; Crook, Derrick; Walker, A. Sarah; Matthews, Philippa C.; Pullan, Steven T.; Nanopore metagenomic sequencing to investigate nosocomial transmission of human metapneumovirus from a unique genetic group among haematology patients in the United Kingdom, Journal of Infection, 2020, 80(5)
(9) Lewandowski, Kuiama; Xu, Yifei; Pullan, Steven T.; Lumley, Sheila F.; Foster, Dona; Sanderson, Nicholas; Vaughan, Alison; Morgan, Marcus; Bright, Nicole; Kavanagh, James; Vipond, Richard; Carroll, Miles; Marriott, Anthony C.; Gooch, Karen E.; Andersson, Monique; Jeffery, Katie; Peto, Timothy E. A.; Crook, Derrick W.; Walker, A. Sarah; Matthews, Philippa C.; Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples, Journal of Clinical Microbiology, 2020, 58(1)
(10) Xu, Yifei; Ramey, Andrew M.; Bowman, Andrew S.; DeLiberto, Thomas J.; Killian, Mary L.; Krauss, Scott; Nolting, Jacqueline M.; Torchetti, Mia Kim; Reeves, Andrew B.; Webby, Richard J.; Stallknecht, David E.; Wan, Xiu-Feng; Low-Pathogenic Influenza A Viruses in North American Diving Ducks Contribute to the Emergence of a Novel Highly Pathogenic Influenza A(H7N8) Virus, Journal of Virology, 2017, 91(9)
1. 山东省自然科学基金青年基金(A)类项目，项目负责人
2. 国家自然科学基金面上项目，项目负责人
3. 泰山学者青年专家项目，项目负责人
4. 山东省高等学校青年创新团队，项目团队负责人
5. 国家重点研发计划重点专项，课题骨干/任务参与单位负责人
6. 教育部春晖计划国际合作科研项目，项目负责人
7. 山东省自然科学基金优秀青年基金（海外），项目负责人
8. 山东大学集成攻关培育项目（中央高校基本科研业务费专项资金资助），项目团队负责人
9. 山东大学齐鲁青年学者（第一层次）学科建设经费，项目负责人
许一菲 教授
1.曲冠宇
2.李硕
3.胡莉
4.李红凤
5.张新宇
6.兰洁
7.韦雪敏
8.申园园
9.李超
10.王玉昊
11.麻泽鹏
12.何念铮
13.张宇涵
14.黄湘麟
